PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000361.1_g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 334aa    MW: 38156.8 Da    PI: 5.9509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000361.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.35e-4381201112
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPt+eelv +yL++kv++ k++l +vi++vd+y++ePwd+++     ++e++ewyfFs++d+ky+tg+r+nrat++g+W
  Itr_sc000361.1_g00027.1   8 VPPGFRFHPTEEELVGYYLNRKVNSLKIDL-DVITDVDLYRIEPWDIQErckLGYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFW 92 
                              69****************************.9***************953432233677*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgr 112
                              katg+dk+vls k++ +g++ktLvfy+g 
  Itr_sc000361.1_g00027.1  93 KATGRDKAVLS-KEKIIGMRKTLVFYRGF 120
                              ***********.9999**********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-453150IPR003441NAC domain
PROSITE profilePS5100544.8578150IPR003441NAC domain
PfamPF023655.0E-229129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEMMECCVPP GFRFHPTEEE LVGYYLNRKV NSLKIDLDVI TDVDLYRIEP WDIQERCKLG  60
YEEQNEWYFF SHKDRKYPTG TRTNRATAAG FWKATGRDKA VLSKEKIIGM RKTLVFYRGF  120
CQVGTHQLPN LFNFIPKYEE GWVVCRAFKK PIPNCKPAGY EAWNNNNNHC SYYVRDNNNN  180
NSSYTTTLNA SNNTPIHHPS PIINPTFNHQ IGTNFPQFPF TPPHLNPGGG GGYDQINQQQ  240
LVELPQLDSP TVSTKDGAGA AATASEDYED VVDNGGDYSW KDLDYKMIAP PPQGVTIMND  300
HPVLPSYSFA NMPLLIRDDD RNHFSHLLEC FPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-35512512129Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614700.11e-110PREDICTED: NAC domain-containing protein 7-like
RefseqXP_009614701.11e-110PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016458224.11e-110PREDICTED: NAC domain-containing protein 30-like
RefseqXP_016458225.11e-110PREDICTED: NAC domain-containing protein 30-like
SwissprotQ9C8W95e-97NAC30_ARATH; NAC domain-containing protein 30
TrEMBLM1CGN51e-103M1CGN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000670861e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-83vascular related NAC-domain protein 7